Index

A

Argsor (class in ngsqc.reporter.render) arrange() (ngsqc.arranger.arranger.arranger method)

arranger (class in ngsqc.arranger.arranger) arrFastp() (ngsqc.arranger.arranger.arranger method) arrFastqc() (ngsqc.arranger.arranger.arranger method)

B

BamQC (class in ngsqc.bamqc.BamQC)

byfastp() (ngsqc.fastqc.FastQC.FastQC method) byfastqc() (ngsqc.fastqc.FastQC.FastQC method)

C

convert_table() (ngsqc.reporter.render.Argsor method)

F

fastp2table() (in module ngsqc.fastqc.fastp2table)

FastQC (class in ngsqc.fastqc.FastQC)

G

get_images() (ngsqc.reporter.render.Argsor method)

get_table() (ngsqc.reporter.render.Argsor method)

M

main() (in module ngsqc.reporter.render)

N

ngsqc (module) ngsqc.arranger (module) ngsqc.arranger.arranger (module) ngsqc.bamqc (module) ngsqc.bamqc.BamQC (module) ngsqc.fastqc (module) ngsqc.fastqc.fast_qc (module)

ngsqc.fastqc.fastp (module) ngsqc.fastqc.fastp2table (module) ngsqc.fastqc.FastQC (module) ngsqc.reporter (module) ngsqc.reporter.render (module) ngsqc.reporter.reporter (module) ngsqc.vcfqc (module) ngsqc.vcfqc.VcfQC (module)

Q

qc() (in module ngsqc.fastqc.fast_qc) (in module ngsqc.fastqc.fastp)

R

render() (in module ngsqc.reporter.render)

report() (in module ngsqc.reporter.reporter)

V

VcfQC (class in ngsqc.vcfqc.VcfQC)