Source code for ngsqc.fastqc.FastQC

"""This is the beginning of Fastq
"""
import os
import fast_qc 
import fastp 

class FastQC:
    """
    init the FastQC class
        
    Args:
        fq (str) : this is the input fastq file
        prefix (str) : the output prefix
        
    """
    
    def __init__(self,fqs,prefix):
        self.fqs = fqs
        self.prex = prefix
        

    def byfastqc(self):
        fast_qc.qc(self.fqs,self.prex)  

    def byfastp(self):
	"""the docstring is cool
    """    
        fastp.qc(self.fqs,self.prex)